T4 DNA Ligase (isolated and purified from an E. coli strain) catalyzes the formation of a phosphodiester bond between juxtaposed5’-phosphate and 3’-hydroxyl groups in duplex DNA or RNA. This enzyme is capable of joining adjacent nucleotides in either a blunt-ended or cohesive ended configuration, as well as repairing single-stranded nicks in duplex DNA, RNA or DNA/RNA hybrids.
cat. no.
amount
note
Weiss Units
CE Units
STS-TDL 100
160 ul
10X T4 Ligase Buffer and 2X Quick Ligase Buffer
400
80000
STS-TDL 1000
4x160 ul
10X T4 Ligase Buffer and 2X Quick Ligase Buffer
4x400
4x80000
FOR RESEARCH USE ONLY
SHIPPING
Shipped in green ice.
FORM
Liquid
SHELF LIFE
12 months
STORAGE
Store at -20°C
UNIT DEFINITION
5,9 Weiss UNITS of T4 Ligase is the amount of the enzyme required to catalyze the ligation of greater than 95% of 1μg of λ/HindIII fragments at 16°C in 20 min.
CONCENTRATION
2.5 Weiss units/μl (500 CE units/μl)
BUFFER
Standard Ligation Buffer, 10x conc.
500 mM Tris-HCl pH 7.8 at 25 °C, 100 mM MgCl2, 100 mM DTT, 10 mM ATP and 25 μg/ml BSA
Quick Ligation Buffer, 2x conc.
60 mM Tris-HCl pH 7.8 at 25 °C, 20 mM MgCl2, 20 mM DTT, 2 mM ATP and 10 % PEG
Assay set up
Before starting, vortex all components thoroughly to ensure homogeneity.
Prepare a premix for the number of assays you need according to the following protocol:
A white precipitate in the Ligation Buffer is normal and does not affect the reaction efficiency. Do not heat the buffer, as this will damage the contained ATP.
Heat inactivation:
T4 DNA Ligase can be inactivated by incubation at 65 °C for 10 minutes.
Note:
• One Cohesive-End Ligation Unit (CEU) is defined as the amount of enzyme required to give 50 % ligation of Hind III fragments of λ DNA (5’ DNA termini concentration of 0.12 μM, 300 μg/ml) in a total reaction volume of 20 μl in 30 minutes at 16 °C in 1x T4 DNA Ligase Reaction Buffer.
• One Weiss unit is equivalent to approx. 200 CE units.
• T4 DNA Ligase is strongly inhibited by NaCl or KCl if the concentration exceeds 200 mM.
• Ligation of blunt-ended and single-base pair overhang fragments requires about 50 times as much enzyme to achieve the same extent of ligation as cohesive-end DNA fragments. Blunt- end ligation may be enhanced by addition of PEG 4000 (10 % w/v final concentration) or hexamine chloride, or by reducing the ATP concentration to 50 μM.
• To dilute T4 DNA Ligase for subsequent storage at -20 °C a stor- age buffer containing 50 % glycerol should be used, to dilute Ligase for immediate use, 1x Reaction Buffer is recommended.
Standard
Quick
component
final conc.
20 ul assay
component
final conc.
20 ul assay
10X Standard buffer
Vector/Insert DNA
1X
100ng-1ug
2 ul
100ng-1ug
2X Quick buffer
Vector/Insert DNA
1X
100ng-1ug
10 ul
100ng-1ug
T4 DNA Ligase
0.1-1.0 Weiss
0.04-0.4 ul
T4 DNA Ligase
0.1-1.0 Weiss
0.04-0.4 ul
MG Water
-
up to 20 ul
MG Water
-
up to 20 ul
Incubate for 20-30 min @ at 16°C for optimal ligation
Incubate for for 5 min for cohesive-ended ligations or 15 min for blunt-ended ligations at ambient temperature (20 - 25 °C).
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